@teko whatever you expect, GPIO can't be shared or you'll face some serious malfunction. 1 GPIO pin should be used for only a single purpose : arcade button, led, reset or power. With the configurable mk_arcade, you must remove as many arcade buttons as "side use" you'd wish.if you want power + reset + led, that's 3 gpio ... 3 less arcade buttons, not sure it's a good idea
If you want the exact mapping of the N64, you need to edit yourself the buttons and switch to a custom config. What you need is :
edit the files in /recalbox/share/configs/mupen (or mupen64 or mupen64plus, i never remember)
add in the recalbox.conf and add at the bottom (or wheverever else) n64.configfile=dummy so that the files you edited won't be overwritten