@Tormentor667 hi
several possibilities :
- if your games are composed of 1 .cue file + xx .bin files, you can scrap the .cue only using a external scrapper (arrm or skraper), and enable the "gamelist only" button in the ES menu.
- You can convert your .cue+.bin game in a .chd format (1 file) - One disc -> One .chd file.
I suggest the second point, with a redump romset of course. .chd are compressed, and work fine. You can also found on the net a .chd redump romset if you need it.